- JMOL FLOATING RESIDUE GLITCH SERIAL NUMBERS
- JMOL FLOATING RESIDUE GLITCH FULL
Proteopedia page on using Java in relation to Jmol. bug fix: defined atom sets not indicating changes when models are deleted bug fix: parameter setting of Jmol integer parameters with float values. To find out the number of a residue, click on it. Thus, 'select 1' will select residue 1 in each chain plus hetero residue 1. Residues numbers are unique within each chain, and within hetero residues. JMOL FLOATING RESIDUE GLITCH SERIAL NUMBERS
CloseFile() + + // Create a last dummy residue in resnums that holds. Group/Residue numbers Each residue is give a residue number (not to be confused with the serial numbers of the atoms within the residue).
JSmol pros and cons describes the problems JSmol has with large models and certain web browsers. If you have trouble then you may need to apply each of the bug fixes separately.Detailed explanation of the parameters included in the Info variable.Technical information about the libraries used to implement both the Java and HTML5 modes and to interact with them via scripts and user interface controls such as buttons, links, and menus.
JMOL FLOATING RESIDUE GLITCH FULL
Jmol JavaScript Object: A full discussion of what JSmol is and how it can be implemented on a web page. Rendering in the HTML5 mode can be sped up substantially with judicial use of PlatformSpeed. Where it is noticed is with rending structures involving 20,000+ atoms or with surface creation. Sequence View: Fixed crash when foreground and background residue colors are. Backward compatibility (a few things the behavior of which has changed across Jmol versions) Compatibility with other software, code libraries, JavaScript. The Java mode gives faster performance and smoother rotation than the HTML5 mode by a factor of 6 to 10, typically. Licensing: Fixed bug where users cannot configure Floating License Manager. Troubleshooting the Jmol Object in web pages (formerly Jmol Applet) (obsolete) Browser Support for the Jmol Object in web pages. JSmol/HTML5 (no Java) is virtually identical to JSmol/Java in terms of rendering. For convenience, chemically meaningful groups of :class:Atoms such as a :class:Residue or a :class:Segment (typically a whole molecule or all of. 
iPad) or has not been installed because of concerns for Java being a security threat. For example, lets say that you wish to select a single residue (10) on one chain of a pdb file with a dimeric protein bound to DNA (four chains). This enables Jmol to display interactive 3D molecular structures on devices that do not have Java installed, or for which Java is not available (such as smart phones and some tablet computers, e.g. In selecting atoms or residues, it is possible to discriminate between chains in a file that contains multiple molecules. JSmol is a JavaScript framework that allows web developers to create pages that utilize either Java or HTML5 (no Java), at will.
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